> For the complete documentation index, see [llms.txt](https://jiawei-li.gitbook.io/sapbase-user-guide/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://jiawei-li.gitbook.io/sapbase-user-guide/analysis/pathway-analysis.md).

# Pathway Analysis

In the "Pathway Analysis" module, users can perform rapid <mark style="color:red;">**KEGG pathway analysis**</mark> on any gene of the specified Sapindaceae species. The results will display an interactive pathway map enriched by the input genes, and support jumping to the corresponding interface in the KEGG database.

### Input file format <a href="#input-file-format" id="input-file-format"></a>

The input file is the gene ID of litchi, longan, rambutan, yellowhorn, Acer and soapberry. Note that in this module the user is required to input the gene ID with transcript identification.

For example (litchi ID):

```
LITCHI000611.m1
LITCHI000622.m1
LITCHI000632.m4
LITCHI001180.m2
LITCHI001342.m1
LITCHI001532.m2
```

or (longan ID)

```
Dil.01g028270.1.t1
Dil.01g023790.1.t1
Dil.01g032460.1.t1
Dil.01g001110.1.t1
Dil.01g021120.1.t1
Dil.01g029320.1.t1
```

### Output file format <a href="#output-file-format" id="output-file-format"></a>

<figure><img src="/files/xrv1ivpuJjb5evR2oKRy" alt=""><figcaption></figcaption></figure>