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SapBase User Guide
  • 😄SapBase (Sapinaceae Genome DataBase)
  • Data acquire and analyze methods in SapBase
  • BROWSE
    • Species Information
    • Genome Browser
    • Sapindaceae Phylogeny
  • Search
    • 👍Meta Search
    • Gene Search
    • Functional Description
    • Domain Search
  • ANALYSIS
    • Blast
    • ID Mapping
    • Gene Expression
      • Multiple Experiment Comparison
      • Gene Coexpression
      • Spatiotemporal Expression in eFP
    • Gene Set Function Analysis
    • Gene Location Viewer
    • Synteny Analysis
    • Protein Interaction Prediction
    • Transcription Factors
    • Pathway Analysis
    • Homolog Find
    • sRNA Target Prediction
  • DOWNLOAD
    • Bulk Sequence Fetch
    • Genomes
    • Browse SRA Data
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  • Input file format
  • Output file format

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  1. ANALYSIS

Pathway Analysis

In the "Pathway Analysis" module, users can perform rapid KEGG pathway analysis on any gene of the specified Sapindaceae species. The results will display an interactive pathway map enriched by the input genes, and support jumping to the corresponding interface in the KEGG database.

Input file format

The input file is the gene ID of litchi, longan, rambutan, yellowhorn, Acer and soapberry. Note that in this module the user is required to input the gene ID with transcript identification.

For example (litchi ID):

LITCHI000611.m1
LITCHI000622.m1
LITCHI000632.m4
LITCHI001180.m2
LITCHI001342.m1
LITCHI001532.m2

or (longan ID)

Dil.01g028270.1.t1
Dil.01g023790.1.t1
Dil.01g032460.1.t1
Dil.01g001110.1.t1
Dil.01g021120.1.t1
Dil.01g029320.1.t1

Output file format

PreviousTranscription FactorsNextHomolog Find

Last updated 1 year ago

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