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Bulk Sequence Fetch

PrevioussRNA Target PredictionNextGenomes

Last updated 1 year ago

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In the "Bulk Sequence Fetch" function, users can easily search and download the gene sequences and genome interval sequences of Sapindaceae species.

Input file format & Result

Mode 1

Input the gene ID of any Sapindaceae species for sequence extraction, including CDS, protein, promoter, mRNA, gDNA, etc.

The input format should be one gene per line, separated by commas.

Example of input format:

LITCHI001198,
LITCHI008798,
LITCHI001966

Mode 2

Specify the species and input one or more genome intervals to quickly obtain the sequence of the interval. The input format is chromosome ID,starting position,ending position. Note the use of commas as delimiters, one data per line.

Example for litchi:

Chr1,4687301,4878100
Chr9,13891945,13917141
Chr7,18299338,18317002

Example for longan:

Chr1,4657693,4717716
Chr15,10643355,10662622
Chr3,18526335,18532893

Example for rambutan:

GWHBECQ00000001,8294047,8314385
GWHBECQ00000002,10857013,10864912
GWHBECQ00000003,10808023,10810961

Example for yellowhorn:

X.sor_LG1,16292302,16310690
X.sor_LG2,20808064,20829522
X.sor_LG8,18137033,18138537

Example for Acer:

chr01,61538411,61542561
chr02,27433954,27437789
chr08,14474626,14479064

Example for soapberry:

GWHBECP00000001,16186266,16188484
GWHBECP00000004,12767613,12773613
GWHBECP00000007,11396317,11400946